Stem-loop sequence aga-mir-10361b

Accession

MI0033338 (change log)

Description

Anopheles gambiae miR-10361b stem-loop

Literature search

1 open access papers mention aga-mir-10361b
(1 sentences)

Stem-loop

   --               a       ---u   a 
5'   acacgauaagaggac guuuacg    uuc a
     ||||||||||||||| |||||||    |||  
3'   ugugcuauuuuucug uaaaugc    agg u
   ca               g       uugu   c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (AgamP3; GCA_000005575.1): chrX: 1722053-1722115 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-10361b

• aga-mir-10361b: chrX: 1722053-1722115 [+]
• aga-mir-10375a: chrX: 1722335-1722398 [+]
• aga-mir-10375b-1: chrX: 1722550-1722613 [+]
• aga-mir-10361a-1: chrX: 1722757-1722819 [+]
• aga-mir-10375b-2: chrX: 1723257-1723320 [+]
• aga-mir-10361a-2: chrX: 1723464-1723526 [+]
• aga-mir-10355: chrX: 1723972-1724033 [+]
• aga-mir-10375b-3: chrX: 1724403-1724466 [+]
• aga-mir-10361a-3: chrX: 1724610-1724672 [+]

Database links

• miRBase Tracker:MI0033338

Mature sequence aga-miR-10361b-5p

• Accession: MIMAT0041505
• Sequence: 1 - acacgauaagaggacaguuuacg - 23
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-10361b-3p

• Accession: MIMAT0041506
• Sequence: 41 - uaaauggucuuuuuaucguguac - 63
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).