Stem-loop sequence aga-mir-2944b

Accession

MI0033339 (change log)

Description

Anopheles gambiae miR-2944b stem-loop

Literature search

5 open access papers mention aga-mir-2944b
(16 sentences)

Stem-loop

   ga   -    c   g         --u   a 
5'   agg aacu ccg ugugauaug   ugg a
     ||| |||| ||| |||||||||   ||| a
3'   ucc uuga ggc acacuauac   gcc a
   -g   a    u   g         cau   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 43009067-43009127 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-2944b

• aga-mir-286: chr3R: 43009395-43009490 [-]
• aga-mir-2944b: chr3R: 43009067-43009127 [-]
• aga-mir-2944a-1: chr3R: 43008879-43008934 [-]
• aga-mir-309: chr3R: 43008711-43008784 [-]

Database links

• miRBase Tracker:MI0033339

Mature sequence aga-miR-2944b-5p

• Accession: MIMAT0041507
• Sequence: 1 - gaaggaacucccggugugauaug - 23
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-2944b-3p

• Accession: MIMAT0041508
• Sequence: 41 - uaucacagcgguaguuaccug - 61
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).