Stem-loop sequence aga-mir-10377b

Accession

MI0033386 (change log)

Description

Anopheles gambiae miR-10377b stem-loop

Literature search

1 open access papers mention aga-mir-10377b
(1 sentences)

Stem-loop

       u                cguaaccaauaugcaagcgaucugucacaa 
5' auag uggaguuggaaauuga                              g
   |||| ||||||||||||||||                              a
3' uauc accuuaaucuuugacu                              g
       u                acuacugaguaaucuaagcgguaguuuagc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 19372525-19372629 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-10377b

• aga-mir-10377a: chr3R: 19372881-19372972 [-]
• aga-mir-10377b: chr3R: 19372525-19372629 [-]

Database links

• miRBase Tracker:MI0033386

Mature sequence aga-miR-10377b-5p

• Accession: MIMAT0041580
• Sequence: 7 - ggaguuggaaauugacguaacc - 28
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-10377b-3p

• Accession: MIMAT0041581
• Sequence: 79 - ucaucaucaguuucuaauucca - 100
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).