miRBase entry: aga-mir-10378

Stem-loop aga-mir-10378


Accession
MI0033387
Description
Anopheles gambiae aga-mir-10378 precursor miRNA

Literature search
1 open access papers mention aga-mir-10378
(1 sentences)

Sequence

ccggugaucgguuuCGUGGUACUCUUGUGGUAAGGaguuucgcacuagcggcggcaccaagcaucUCUAUCAUUUGAGUACCAUGAagucggcacugg
((((((.(((((((((((((((((..((((((.((((((((((.......)))).....))).))).))))))..)))))))))))))))))))))))

Structure
      a                 UU      A   -   -----    ac 
ccggug ucgguuuCGUGGUACUC  GUGGUA GGa guu     ucgc  u
|||||| |||||||||||||||||  |||||| ||| |||     ||||  a
ggucac ggcugaAGUACCAUGAG  UACUAU Ucu cga     ggcg  g
      -                 UU      C   a   accac    gc 


Annotation confidence Not enough data
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Genome context
chr2R: 18852626-18852723 [-]

Database links

Mature aga-miR-10378-5p

Accession MIMAT0041582
Description Anopheles gambiae aga-miR-10378-5p mature miRNA
Sequence 15 - CGUGGUACUCUUGUGGUAAGG - 35
Evidence experimental
Illumina [1]

Mature aga-miR-10378-3p

Accession MIMAT0041583
Description Anopheles gambiae aga-miR-10378-3p mature miRNA
Sequence 66 - UCUAUCAUUUGAGUACCAUGA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25766668
    The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
    Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
    BMC Genomics (2015) 16:100