Stem-loop sequence ssc-mir-1388

Accession

MI0033392 (change log)

Description

Sus scrofa miR-1388 stem-loop

Literature search

1 open access papers mention ssc-mir-1388
(1 sentences)

Stem-loop

    ug    ca  a   u  a        auggugagc 
5' g  ccuc  gg cug ca accugaga         g
   |  ||||  || ||| || ||||||||         u
3' c  ggag  cc gac gu uggacucu         c
    gu    ag  c   u  g        aacagggac 

Deep sequencing

19 reads, 0 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrUScaf4148: 37165-37239 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033392

Mature sequence ssc-miR-1388

• Accession: MIMAT0041590
• Sequence: 9 - aggacugucaaaccugagaaug - 30
• Deep sequencing: 18 reads, 11 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:25230983 "The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing" Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M J Appl Genet. 56:239-252(2015).