Stem-loop sequence ssc-mir-200b

Accession

MI0033407 (change log)

Description

Sus scrofa miR-200b stem-loop

Literature search

7 open access papers mention ssc-mir-200b
(34 sentences)

Stem-loop

      c    -    ug     c      u  ug 
5' ccg cauc uuac  ggcag auugga gg  u
   ||| |||| ||||  ||||| |||||| ||  c
3' ggc guag aaug  ccguc uaaucu cu  u
      a    u    gu     a      -  gg 

Deep sequencing

385 reads, 0 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr6: 58064306-58064370 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033407

Mature sequence ssc-miR-200b

• Accession: MIMAT0041606
• Sequence: 41 - uaauacugccugguaaugaugac - 63
• Deep sequencing: 378 reads, 14 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:25230983 "The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing" Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M J Appl Genet. 56:239-252(2015).