miRBase entry: gma-MIR4348d

Stem-loop gma-MIR4348d


Accession
MI0033432
Description
Glycine max gma-MIR4348d precursor miRNA

Literature search
1 open access papers mention gma-MIR4348d
(1 sentences)

Sequence

accaauguaagacaauucaccugcagcgaaagcucacucucauguaaggguugacaacaaugugauggaaaguagugguuaauuaaacucaagauaauagaagacuaugugucaaacuugcaagaugauauuauuaugauaguuggaagcauucagaauagcaagaucaauaugugagaguauccaacaccuaauauuaucaucuuguaaguuugauacauaguuuuucauuauuuuuuuaguuugacuacuaauuucuauggcauuaccaaauaacucgugugugagugagcUUUCGGUGUCGGUGAAUUGCCcuacauugcu
..(((((((.(.(((((((((.(((.(((((((((((((.(((....((((((.....(((((.(((((((.(((((((((((((((...((((((((.(((((((((((((((((((((((((((((((.(((((.(...((((((.((.((((..(((..........))).)))).)).)))))).).))))).))))))))))))))))))))))))))))))).))))))))))))).)))))))))).))))))).)))))......))))))..))).))))))))))))).))).))))))))).).)))))))..

Structure
ac       a a         u   g             u   guaa      -acaac     g       g          -     cuc        a                               u     u aua      a  a    ga   gcaa 
  caaugua g caauucacc gca cgaaagcucacuc cau    ggguug      aaugu auggaaa uagugguuaa uuaaa   aagauaau gaagacuaugugucaaacuugcaagaugaua uauua g   guugga gc uuca  aua    g
  ||||||| | ||||||||| ||| ||||||||||||| |||    ||||||      ||||| ||||||| |||||||||| |||||   |||||||| ||||||||||||||||||||||||||||||| ||||| |   |||||| || ||||  |||     
  guuacau C GUUAAGUGG UGU GCUUUcgagugag gug    cucaau      uuacg uaucuuu aucaucaguu gauuu   uuuuauua uuuuugauacauaguuugaauguucuacuau auaau c   caaccu ug gagu  uau    a
uc       c C         C   G             u   --ug      aaacca     g       a          u     ---        c                               u     c --a      a  a    -g   aacu 


Annotation confidence Not enough data
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Genome context
chr1: 6848789-6849112 [+]

Database links

Mature gma-miR4348d

Accession MIMAT0041640
Description Glycine max gma-miR4348d mature miRNA
Sequence 294 - UUUCGGUGUCGGUGAAUUGCC - 314
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562