miRBase entry: gma-MIR169w

Stem-loop gma-MIR169w


Accession
MI0033468
Description
Glycine max gma-MIR169w precursor miRNA

Literature search
23 open access papers mention gma-MIR169w
(98 sentences)

Sequence

ggaaugaagcCAAGGAUGACUUGCCGGCAUUaauuugcuaugaagcuagagaguauagcuauuagcuagcuucauuugcugaguuuuccggcagguuauccuguggcuacauuug
.(((((.((((((((((((((((((((....(((((((.((((((((((..((((....))))..))))))))))..)).)))))..))))))))))))))).))))).))))).

Structure
g     a     -               CAUU     -  -u          ag    u 
 gaaug agcCA AGGAUGACUUGCCGG    aauuu gc  augaagcuag  agua a
 ||||| ||||| |||||||||||||||    ||||| ||  ||||||||||  ||||  
 uuuac ucggu uccuauuggacggcc    uugag cg  uacuucgauc  uuau g
g     a     g               --uu     u  uu          ga    c 


Annotation confidence Not enough data
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Genome context
chr9: 5348169-5348283 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR169w
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR169w

Accession MIMAT0041676
Description Glycine max gma-miR169w mature miRNA
Sequence 11 - CAAGGAUGACUUGCCGGCAUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562