Stem-loop gma-MIR399o

Accession

MI0033520

Description

Glycine max gma-MIR399o precursor miRNA

Literature search

14 open access papers mention gma-MIR399o
(87 sentences)

Sequence

2043 reads, 20.0 reads per million, 134 experiments

aucagcaauaGGGCUCCUCUCUCCUGGCAUGcagacagacauuauuuugguaguuaccuaccaaaaguugguauuaacaacaUGCCAAGGGAGAGUUGCCCUGUggcugcu
..((((.(((((((..(((((((.(((((((.......((....(((((((((....)))))))))....))........))))))).)))))))..))))))).))))..

Structure

au    a       UC       C       -cagacag  auua         u 
  cagc auaGGGC  CUCUCUC UGGCAUG        ac    uuuugguag u
  |||| |||||||  ||||||| |||||||        ||    |||||||||  
  gucg UGUCCCG  GAGAGGG ACCGUac        ug    aaaaccauc a
uc    g       UU       A       aacaauua  guug         c 

Annotation confidence High

Genome context

chr20: 39357304-39357414 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399o

Mature gma-miR399o-5p

• Accession: MIMAT0041728
• Description: Glycine max gma-miR399o-5p mature miRNA
• Sequence: 11 - GGGCUCCUCUCUCCUGGCAUG - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR399o-3p

• Accession: MIMAT0054566
• Description: Glycine max gma-miR399o-3p mature miRNA
• Sequence: 83 - UGCCAAGGGAGAGUUGCCCUGU - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562