Stem-loop sfr-mir-2a

Accession

MI0033596

Description

Spodoptera frugiperda sfr-mir-2a precursor miRNA

Literature search

1 open access papers mention sfr-mir-2a
(3 sentences)

Sequence

719012 reads, 36067.0 reads per million, 42 experiments

aaugugguuuugGCAUCAAAGUCGGCUUGUCAUAggucauaacguagcuaUCACAGCCAGCUUUGAUGAGCAUGaccucauu
((((.((((.((.(((((((((.((((.((.((((.(........).)))).)))))).)))))))))..)).)))).))))

Structure

    u    u  -G         C    U  C    g cau 
aaug gguu ug  CAUCAAAGU GGCU GU AUAg u   a
|||| |||| ||  ||||||||| |||| || |||| |    
uuac ccaG AC  GUAGUUUCG CCGA CA Uauc a   a
    u    U  GA         A    -  C    g ugc 

Annotation confidence Medium

Genome context

JQCY02000649.1: 55599-55680 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from sfr-mir-2a

Mature sfr-miR-2a-5p

• Accession: MIMAT0041870
• Description: Spodoptera frugiperda sfr-miR-2a-5p mature miRNA
• Sequence: 13 - GCAUCAAAGUCGGCUUGUCAUA - 34
• Evidence: experimental ; Illumina [1]

Mature sfr-miR-2a-3p

• Accession: MIMAT0041871
• Description: Spodoptera frugiperda sfr-miR-2a-3p mature miRNA
• Sequence: 51 - UCACAGCCAGCUUUGAUGAGCAUG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25693181
   Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
   Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
   PLoS One (2015) 10:e0116988