Stem-loop sequence sfr-mir-279b

Accession

MI0033652 (change log)

Description

Spodoptera frugiperda miR-279b stem-loop

Literature search

1 open access papers mention sfr-mir-279b
(1 sentences)

Stem-loop

      a     cac   a      c    u     ua     --u  u 
5' agc gccuc   gga gauaag gaua ucuag  ucaag   ug u
   ||| |||||   ||| |||||| |||| |||||  |||||   ||  
3' ucg uggag   ucu cuauuc cuau agauc  aguuc   gc u
      c     ---   c      a    u     --     uau  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM75363v2; GCA_000753635.2): JQCY02000179.1: 50062-50148 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033652

Mature sequence sfr-miR-279b-5p

• Accession: MIMAT0041967
• Sequence: 17 - gauaagcgauauucuaguauc - 37
• Evidence: experimental; Illumina [1]

Mature sequence sfr-miR-279b-3p

• Accession: MIMAT0041968
• Sequence: 55 - ugacuagauuaucacuuauccu - 76
• Evidence: experimental; Illumina [1]

References

1. PMID:25693181 "Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21" Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK PLoS One. 10:e0116988(2015).