miRBase entry: sly-MIR319d

Stem-loop sly-MIR319d


Accession
MI0033681
Description
Solanum lycopersicum sly-MIR319d precursor miRNA

Literature search
22 open access papers mention sly-MIR319d
(151 sentences)

Sequence

agagaAGGAAACUGUUUAGUCCAACCcaaggugggguauuggaacugaucuuugcugcugaaucauuggcucaugagcaugucaaagaagaugauugaacauucuggacauguucuugcuccaaugaugcaggagcugagcucgguuuuucaccgccuuuucuuggacugaaggguuuccuucccuuc
((.((((((((((.((((((((((...(((((((......((((((((.(((.(((.(((.((((((((..((.(((((((((..((((..(......)..)))).))))))))).))..)))))))).))).))).))).))))))))...)))))))...)))))))))).)))))))))).))..

Structure
--  a          G          CCc       gguauu        u   u   g   a        cu  u         aa    ga ga 
  ag gaAGGAAACU UUUAGUCCAA   aaggugg      ggaacuga cuu gcu cug aucauugg  ca gagcauguc  agaa  u  u
  || |||||||||| ||||||||||   |||||||      |||||||| ||| ||| ||| ||||||||  || |||||||||  ||||  |   
  uc cuuccuuugg aagucagguu   uuccgcc      uuuuggcu gag cga gac uaguaacc  gu cuuguacag  ucuu  a  u
cu  c          g          cuu       ---acu        c   u   g   g        uc  u         -g    ac ag 


Annotation confidence Not enough data
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Genome context
chr3: 67741504-67741691 [+]

Database links

Mature sly-miR319d

Accession MIMAT0042007
Description Solanum lycopersicum sly-miR319d mature miRNA
Sequence 6 - AGGAAACUGUUUAGUCCAACC - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195