miRBase entry: sly-MIR827

Stem-loop sly-MIR827


Accession
MI0033684
Description
Solanum lycopersicum sly-MIR827 precursor miRNA

Literature search
5 open access papers mention sly-MIR827
(12 sentences)

Sequence

auuuguuuguugauggucaucuauucaucauaucauuuggcauaguuuuuggaaccauuaauaugccaugaUUAGAUGAACAUCAACAAACAucuuc
...((((((((((((.(((((((.(((..........(((((((.((..((....))..)))))))))))).))))))).)))))))))))).....

Structure
--auu            g       u   ucauaucauu       g  uu  g 
     uguuuguugaug ucaucua uca          uggcaua uu  ug a
     |||||||||||| ||||||| |||          ||||||| ||  ||  
     ACAAACAACUAC AGUAGAU agu          accguau aa  ac a
cuucu            A       U   ----------       -  uu  c 


Annotation confidence Not enough data
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Genome context
chr12: 65453531-65453627 [+]

Database links

Mature sly-miR827

Accession MIMAT0042010
Description Solanum lycopersicum sly-miR827 mature miRNA
Sequence 72 - UUAGAUGAACAUCAACAAACA - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195