miRBase entry: sly-MIR530

Stem-loop sly-MIR530


Accession
MI0033685
Description
Solanum lycopersicum sly-MIR530 precursor miRNA

Literature search
3 open access papers mention sly-MIR530
(7 sentences)

Sequence

uuaucugcauuugcaccugcaccuuagugaacgaauuaguucgcguauaauucgugcagaaAGGUGUAGGUGUUCAUGCAGAcaaaa
...(((((((..(((((((((((((..((.((((((((.........)))))))).))..)))))))))))))..))))))).....

Structure
--uua       uu             ag  a        guu 
     ucugcau  gcaccugcaccuu  ug acgaauua   c
     |||||||  |||||||||||||  || ||||||||   g
     AGACGUA  UGUGGAUGUGGAa  ac ugcuuaau   c
aaaac       CU             ag  g        aug 


Annotation confidence Not enough data
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Genome context
chr9: 1677560-1677646 [+]

Database links

Mature sly-miR530

Accession MIMAT0042011
Description Solanum lycopersicum sly-miR530 mature miRNA
Sequence 62 - AGGUGUAGGUGUUCAUGCAGA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195