Stem-loop sequence sly-MIR393

Accession

MI0033686 (change log)

Description

Solanum lycopersicum miR393 stem-loop

Literature search

18 open access papers mention sly-MIR393
(88 sentences)

Stem-loop

   --auu     a            u        -      aauua 
5'      auucc aagggaucgcau gauccugu guucca     a
        ||||| |||||||||||| |||||||| ||||||     u
3'      uaagg uucucuagcgua cuagggua cagggu     u
   ccucu     c            -        u      accaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr3: 3081745-3081831 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033686

Mature sequence sly-miR393

• Accession: MIMAT0042012
• Sequence: 62 - aucaugcgaucucuucggaau - 82
• Evidence: experimental; Illumina [1]

References

1. PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).