Stem-loop sequence sly-MIR399b

Accession

MI0033690 (change log)

Description

Solanum lycopersicum miR399b stem-loop

Literature search

1 open access papers mention sly-MIR399b
(2 sentences)

Stem-loop

   --         ua      a     a  -  a   ua 
5'   ugauagggc  cucucu uuggc ug ca uug  u
     |||||||||  |||||| ||||| || || |||  a
3'   auugucccg  gagagg aaccg ac gu gac  u
   uc         uc      a     c  a  c   uu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (SL2.50; GCA_000188115.2)	Overlapping transcripts
chr3: 3816894-3816967 [-]	intergenic
chr3: 3820945-3821018 [-]	intergenic
chr3: 3825271-3825344 [-]	intergenic

Database links

• miRBase Tracker:MI0033690

Mature sequence sly-miR399b

• Accession: MIMAT0042016
• Sequence: 6 - gggcuacucucuauuggcaug - 26
• Evidence: experimental; Illumina [1]

References

1. PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).