miRBase entry: sly-MIR399b

Stem-loop sly-MIR399b


Accession
MI0033690
Description
Solanum lycopersicum sly-MIR399b precursor miRNA

Literature search
1 open access papers mention sly-MIR399b
(2 sentences)

Sequence

ugauaGGGCUACUCUCUAUUGGCAUGcaauuguauauuucagcugacacgccaaaggagagcugcccuguuacu
(((((((((..((((((.(((((.((((.(((.......))).)).)).))))).))))))..)))))))))..

Structure
--         UA      A     A  -  a   ua 
  ugauaGGGC  CUCUCU UUGGC UG ca uug  u
  |||||||||  |||||| ||||| || || |||  a
  auugucccg  gagagg aaccg ac gu gac  u
uc         uc      a     c  a  c   uu 


Annotation confidence Not enough data
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Genome context
chr3: 3816894-3816967 [-]

Database links

Mature sly-miR399b

Accession MIMAT0042016
Description Solanum lycopersicum sly-miR399b mature miRNA
Sequence 6 - GGGCUACUCUCUAUUGGCAUG - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195