miRBase entry: sly-MIR10534

Stem-loop sly-MIR10534


Accession
MI0033694
Description
Solanum lycopersicum sly-MIR10534 precursor miRNA


Sequence

gacucCAAAAUACCCUUGUCAUCCAAcauuggauucaaaauugaccacuuauuuaacgguccauuuugaacaaaaagguggaugacaaggguauuuuggagccaa
(.(((((((((((((((((((((((........((((((((.((((...........)))).))))))))........))))))))))))))))))))))).)..

Structure
-- a                       Acauugga        u    acuu 
  g cucCAAAAUACCCUUGUCAUCCA        uucaaaau gacc    a
  | |||||||||||||||||||||||        |||||||| ||||    u
  c gagguuuuaugggaacaguaggu        aaguuuua cugg    u
aa c                       ggaaaaac        c    caau 


Annotation confidence Not enough data
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Genome context
chr4: 47776933-47777037 [+]

Database links

Mature sly-miR10534

Accession MIMAT0042020
Description Solanum lycopersicum sly-miR10534 mature miRNA
Sequence 6 - CAAAAUACCCUUGUCAUCCAA - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195