miRBase entry: sly-MIR10535a

Stem-loop sly-MIR10535a


Accession
MI0033696
Description
Solanum lycopersicum sly-MIR10535a precursor miRNA


Sequence

aagggUUGGCAUAAGUUUGUGAAAGCCGGagauuuaggaguaaaguacaauuauuuucgcaaauaauuguaucuuuugcucuuaaaccuuuagcuuuaacaaauuugugccaacccuuug
((((((((((((((((((((.(((((.((((.((((((((((((((((((((((((....))))))))))))..)))))))))))).)))).))))).))))))))))))))))))))..

Structure
--                    G     C    a            --            u 
  aagggUUGGCAUAAGUUUGU AAAGC GGag uuuaggaguaaa  guacaauuauuu c
  |||||||||||||||||||| ||||| |||| ||||||||||||  ||||||||||||  
  uucccaaccguguuuaaaca uuucg uuuc aaauucucguuu  uauguuaauaaa g
gu                    a     a    c            uc            c 


Annotation confidence Not enough data
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Genome context
chr8: 3441653-3441772 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR10535a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sly-miR10535a

Accession MIMAT0042022
Description Solanum lycopersicum sly-miR10535a mature miRNA
Sequence 6 - UUGGCAUAAGUUUGUGAAAGCCGG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195