miRBase entry: sly-MIR169f

Stem-loop sly-MIR169f


Accession
MI0033702
Description
Solanum lycopersicum sly-MIR169f precursor miRNA

Literature search
16 open access papers mention sly-MIR169f
(45 sentences)

Sequence

ucugauagccaaggaugacuugccuaaaaucauuuuuaugaagggucuuaacuaauuaaacuuuaguuacuaaaauuaaaguuuauauuauaugaucuuaaaauuggaauuuUAGGCGUUGUCUGAGGCUAACugaga
((.(.(((((..(((((((..(((((((((((.(((((....(((((.((..((((((((((((((((.....)))))))))))).)))))).)))))))))).))..))))))))))))))))..))))).).))..

Structure
--  u a     aa       uu         --  u     ugaa     u  ac    -            a 
  uc g uagcc  ggaugac  gccuaaaau  ca uuuua    ggguc ua  uaau uaaacuuuaguu c
  || | |||||  |||||||  |||||||||  || |||||    ||||| ||  |||| |||||||||||| u
  ag C AUCGG  UCUGUUG  CGGAUuuua  gu aaaau    ucuag au  auua auuugaaauuaa a
ag  u A     AG       --         ag  u     ----     u  --    u            a 


Annotation confidence Not enough data
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Genome context
chr3: 60099187-60099324 [+]

Database links

Mature sly-miR169f

Accession MIMAT0042028
Description Solanum lycopersicum sly-miR169f mature miRNA
Sequence 113 - UAGGCGUUGUCUGAGGCUAAC - 133
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195