miRBase entry: abu-mir-100-1

Stem-loop abu-mir-100-1


Accession
MI0033716
Description
Astatotilapia burtoni abu-mir-100-1 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGuuaagugacaccacaagcuuguaucuacaggucug
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure
--A   C      C   A      uuaa 
   ACC GUAGAU CGA CUUGUG    g
   ||| |||||| ||| ||||||    u
   ugg caucua guu gaacac    g
guc   a      u   c      caca 


Annotation confidence Not enough data
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Genome context
JH425444.1: 108880-108936 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from abu-mir-100-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-100

Accession MIMAT0042041
Description Astatotilapia burtoni abu-miR-100 mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381