miRBase entry: abu-mir-100-2

Accession

MI0033717

Description

Astatotilapia burtoni abu-mir-100-2 precursor miRNA

Sequence

AACCCGUAGAUCCGAACUUGUGgugacuggcugcacaagcucguaucuauagguaug
.(((.((((((.(((.((((((...........)))))).))).)))))).)))...

Structure

--A   C      C   A      guga 
   ACC GUAGAU CGA CUUGUG    c
   ||| |||||| ||| ||||||    u
   ugg uaucua gcu gaacac    g
gua   a      u   c      gucg

Annotation confidence Not enough data

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Genome context

JH425368.1: 1258627-1258683 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-100-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042041
Description	Astatotilapia burtoni abu-miR-100 mature miRNA
Sequence	1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence	experimental Illumina [1]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381