miRBase entry: abu-mir-182

Stem-loop abu-mir-182


Accession
MI0033720
Description
Astatotilapia burtoni abu-mir-182 precursor miRNA


Sequence

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggugguucuagacuugccaacu
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure
-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  aaccguu   aucuug   guggcc      g
uc       cag      ---      uaggua 


Annotation confidence Not enough data
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Genome context
JH425406.1: 933114-933177 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-182

Accession MIMAT0042044
Description Astatotilapia burtoni abu-miR-182 mature miRNA
Sequence 1 - UUUGGCAAUGGUAGAACUCACA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381