miRBase entry: abu-mir-9-1

Stem-loop abu-mir-9-1


Accession
MI0033721
Description
Astatotilapia burtoni abu-mir-9-1 precursor miRNA


Sequence

UCUUUGGUUAUCUAGCUGUAUGaguuuauguaauaucauaaagcuagagaaccgaauguau
..(((((((.(((((((.(((((..((....))..))))).))))))).))))))).....

Structure
---UC       A       G     gu  a 
     UUUGGUU UCUAGCU UAUGa  uu u
     ||||||| ||||||| |||||  ||  
     aagccaa agaucga auacu  aa g
uaugu       g       a     au  u 


Annotation confidence Not enough data
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Genome context
JH425359.1: 416325-416385 [+]

Database links

Mature abu-miR-9-5p

Accession MIMAT0042045
Description Astatotilapia burtoni abu-miR-9-5p mature miRNA
Sequence 1 - UCUUUGGUUAUCUAGCUGUAUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381