miRBase entry: abu-mir-204-1

Stem-loop abu-mir-204-1


Accession
MI0033722
Description
Astatotilapia burtoni abu-mir-204-1 precursor miRNA


Sequence

UUCCCUUUGUCAUCCUAUGCCUggagcugucuguaaggcagggacagcaaaggggagc
((((((((((..((((.((((((((....)))...)))))))))..))))))))))..

Structure
--          CA    A     ---   g 
  UUCCCUUUGU  UCCU UGCCU   gga c
  ||||||||||  |||| |||||   |||  
  aggggaaacg  aggg acgga   ucu u
cg          ac    -     aug   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH425425.1: 742249-742306 [+]

Database links

Mature abu-miR-204

Accession MIMAT0042046
Description Astatotilapia burtoni abu-miR-204 mature miRNA
Sequence 1 - UUCCCUUUGUCAUCCUAUGCCU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381