miRBase entry: abu-mir-143

Accession

MI0033723

Description

Astatotilapia burtoni abu-mir-143 precursor miRNA

Sequence

ggugcagugcugcaucucuggucaguugguagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((.(........).)))))))).))))))))).)..

Structure

-- g         g      u  u agu 
  g ugcagugcu caucuc gg c   u
  | ||||||||| |||||| || |    
  C AUGUCACGA GUAGAG Uc g   g
CU G         A      -  u aug

Annotation confidence Not enough data

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Genome context

JH425754.1: 192631-192685 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-143

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042047
Description	Astatotilapia burtoni abu-miR-143 mature miRNA
Sequence	35 - UGAGAUGAAGCACUGUAGCUC - 55
Evidence	experimental Illumina [1]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381