miRBase entry: abu-mir-9-4

Stem-loop abu-mir-9-4


Accession
MI0033730
Description
Astatotilapia burtoni abu-mir-9-4 precursor miRNA


Sequence

UCUUUGGUUAUCUAGCUGUAUGagugauguacauucuucaUAAAGCUAGAUAACCGAAAGUA
..(((((((((((((((.((((((.((.......)))))))).)))))))))))))))....

Structure
--UC               G      u  ug 
    UUUGGUUAUCUAGCU UAUGag ga  u
    ||||||||||||||| |||||| ||  a
    AAGCCAAUAGAUCGA AUacuu cu  c
AUGA               A      -  ua 


Annotation confidence Not enough data
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Genome context
JH425733.1: 159937-159998 [+]

Database links

Mature abu-miR-9-5p

Accession MIMAT0042045
Description Astatotilapia burtoni abu-miR-9-5p mature miRNA
Sequence 1 - UCUUUGGUUAUCUAGCUGUAUG - 22
Evidence experimental
Illumina [1]

Mature abu-miR-9-3p

Accession MIMAT0042049
Description Astatotilapia burtoni abu-miR-9-3p mature miRNA
Sequence 41 - UAAAGCUAGAUAACCGAAAGUA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381