miRBase entry: abu-mir-199-4

Stem-loop abu-mir-199-4


Accession
MI0033740
Description
Astatotilapia burtoni abu-mir-199-4 precursor miRNA


Sequence

CCCAGUGUUCAGACUACCUGUUcaucaggcugcagcugaACAGUAGUCUGCACAUUGGUUa
.(((((((.((((((((.((((((.(........).)))))))))))))).)))))))...

Structure
--C       U        C      u agg 
   CCAGUGU CAGACUAC UGUUca c   c
   ||||||| |||||||| |||||| |    
   GGUUACA GUCUGAUG ACAagu g   u
aUU       C        -      c acg 


Annotation confidence Not enough data
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Genome context
JH425657.1: 168627-168687 [-]

Database links

Mature abu-miR-199-5p

Accession MIMAT0042050
Description Astatotilapia burtoni abu-miR-199-5p mature miRNA
Sequence 1 - CCCAGUGUUCAGACUACCUGUU - 22
Evidence experimental
Illumina [1]

Mature abu-miR-199-3p

Accession MIMAT0042051
Description Astatotilapia burtoni abu-miR-199-3p mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381