miRBase entry: abu-mir-92a-1

Stem-loop abu-mir-92a-1

Accession

MI0033741

Description

Astatotilapia burtoni abu-mir-92a-1 precursor miRNA

Sequence

agguugggagagguggcaaugcucugugcuuguguggUAUUGCACUUGUCCCGGCCUGU
(((((((((.(((((.(((((((....((....)))))))))))))).)))))))))..

Structure

--         g     g       cugu  u 
  agguuggga aggug caaugcu    gc u
  ||||||||| ||||| |||||||    ||  
  UCCGGCCCU UUCAC GUUAUgg    ug g
UG         G     -       ----  u

Annotation confidence Not enough data

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Genome context

JH425363.1: 1165040-1165098 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from abu-mir-92a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-92a

Accession	MIMAT0042053
Description	Astatotilapia burtoni abu-miR-92a mature miRNA
Sequence	38 - UAUUGCACUUGUCCCGGCCUGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381