miRBase entry: abu-mir-92a-2

Stem-loop abu-mir-92a-2

Accession

MI0033742

Description

Astatotilapia burtoni abu-mir-92a-2 precursor miRNA

Sequence

agguggggaucgguagcaaugcuguguuccuccaggUAUUGCACUUGUCCCGGCCUGU
((((.(((((.(((.((((((((..(.....)..))))))))))).))))).))))..

Structure

--    g     c   a        gu u 
  aggu gggau ggu gcaaugcu  g u
  |||| ||||| ||| ||||||||  | c
  UCCG CCCUG UCA CGUUAUgg  c c
UG    G     U   -        ac u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425469.1: 936505-936562 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-92a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-92a

Accession	MIMAT0042053
Description	Astatotilapia burtoni abu-miR-92a mature miRNA
Sequence	37 - UAUUGCACUUGUCCCGGCCUGU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381