miRBase entry: abu-mir-133a-2

Stem-loop abu-mir-133a-2

Accession

MI0033745

Description

Astatotilapia burtoni abu-mir-133a-2 precursor miRNA

Sequence

agcugguaaaauggaaccaaaucaccucuugaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure

--       aa  u  a        accuc 
  agcuggu  aa gg accaaauc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaag

Annotation confidence Not enough data

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Genome context

JH425323.1: 1964857-1964916 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-133a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-133a

Accession	MIMAT0042055
Description	Astatotilapia burtoni abu-miR-133a mature miRNA
Sequence	39 - UUGGUCCCCUUCAACCAGCUGU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381