miRBase entry: abu-let-7a-4

Stem-loop abu-let-7a-4


Accession
MI0033748
Description
Astatotilapia burtoni abu-let-7a-4 precursor miRNA


Sequence

UGAGGUAGUAGGUUGUAUAGUUuuagggucauacccacacugggagauaacuauucaaccuacugucuuucc
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure
--U              U      uuagg   aua    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   uucugucauccaac uaucaa     uag   gggu  
ccu              u      -----   --a    c 


Annotation confidence Not enough data
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Genome context
JH425848.1: 317552-317623 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-let-7a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-let-7a

Accession MIMAT0042056
Description Astatotilapia burtoni abu-let-7a mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381