miRBase entry: abu-mir-30a-2

Stem-loop abu-mir-30a-2

Accession

MI0033752

Description

Astatotilapia burtoni abu-mir-30a-2 precursor miRNA

Sequence

UGUAAACAUCCUUGACUGGAAGCUgagguuuugacagcgagggCUUUCAGUCGGAUGUUUGCAGC
(((((((((((..(((((((((((...(((.....)))...))))))))))))))))))))))..

Structure

--           UU           gag   u 
  UGUAAACAUCC  GACUGGAAGCU   guu u
  |||||||||||  |||||||||||   ||| g
  ACGUUUGUAGG  CUGACUUUCgg   cga a
CG           --           gag   c

Annotation confidence Not enough data

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Genome context

JH425340.1: 107538-107602 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-30a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-30a-5p

Accession	MIMAT0042057
Description	Astatotilapia burtoni abu-miR-30a-5p mature miRNA
Sequence	1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence	experimental Illumina [1]

Mature abu-miR-30a-3p

Accession	MIMAT0042058
Description	Astatotilapia burtoni abu-miR-30a-3p mature miRNA
Sequence	44 - CUUUCAGUCGGAUGUUUGCAGC - 65
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381