miRBase entry: abu-mir-462

Stem-loop abu-mir-462

Accession

MI0033759

Description

Astatotilapia burtoni abu-mir-462 precursor miRNA

Sequence

UAACGGAACCCAUAAUGCAGCUGugauucugagccccagcugguuaugggguccguuucc
.((((((.((((((((.((((((.(..........))))))))))))))).))))))...

Structure

--U      A        G      u auuc 
   AACGGA CCCAUAAU CAGCUG g    u
   |||||| |||||||| |||||| |     
   uugccu ggguauug gucgac c    g
ccu      g        -      - ccga

Annotation confidence Not enough data

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Genome context

JH425555.1: 856264-856323 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-462

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-462

Accession	MIMAT0042064
Description	Astatotilapia burtoni abu-miR-462 mature miRNA
Sequence	1 - UAACGGAACCCAUAAUGCAGCUG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381