miRBase entry: abu-mir-25

Stem-loop abu-mir-25

Accession

MI0033761

Description

Astatotilapia burtoni abu-mir-25 precursor miRNA

Sequence

aggcggagacuugggcaauugccgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    g     uu g     u   ----   c 
  aggc gagac  g gcaau gcc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u

Annotation confidence Not enough data

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Genome context

JH425502.1: 77728-77787 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-25

Accession	MIMAT0042067
Description	Astatotilapia burtoni abu-miR-25 mature miRNA
Sequence	39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381