miRBase entry: abu-mir-99b

Stem-loop abu-mir-99b

Accession

MI0033767

Description

Astatotilapia burtoni abu-mir-99b precursor miRNA

Sequence

AACCCGUAGAUCCGAUCUUGUggcgaaucugacagcacaagcucgccucugugggucuu
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      gcgaa 
   ACCCGUAGA  CGA CUUGUg     u
   |||||||||  ||| ||||||     c
   ugggugucu  gcu gaacac     u
uuc         cc   c      gacag

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425516.1: 687869-687927 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-99b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-99b

Accession	MIMAT0042072
Description	Astatotilapia burtoni abu-miR-99b mature miRNA
Sequence	1 - AACCCGUAGAUCCGAUCUUGU - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381