miRBase entry: abu-mir-221-1

Stem-loop abu-mir-221-1

Accession

MI0033768

Description

Astatotilapia burtoni abu-mir-221-1 precursor miRNA

Sequence

accuggcauacaauguagauuucugugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        u         auuu     u  uu 
   accuggca acaauguag    cugug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua

Annotation confidence Not enough data

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Genome context

JH425600.1: 562086-562149 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-221-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-221

Accession	MIMAT0042073
Description	Astatotilapia burtoni abu-miR-221 mature miRNA
Sequence	42 - AGCUACAUUGUCUGCUGGGUUUC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381