miRBase entry: abu-mir-30c

Stem-loop abu-mir-30c

Accession

MI0033770

Description

Astatotilapia burtoni abu-mir-30c precursor miRNA

Sequence

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggccgggagugggacuguuugcacu
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  acguuugu agg  gugagggccg ugg   c
uc        c   --          g   ucu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH426018.1: 182309-182370 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-30c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-30c

Accession	MIMAT0042076
Description	Astatotilapia burtoni abu-miR-30c mature miRNA
Sequence	1 - UGUAAACAUCCUACACUCUCGGC - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381