miRBase entry: abu-let-7g-1

Stem-loop abu-let-7g-1


Accession
MI0033773
Description
Astatotilapia burtoni abu-let-7g-1 precursor miRNA


Sequence

UGAGGUAGUAGUUUGUAUAGUUuuaggaucacaccagaucugggagauaacuauacagucuacugucuuucu
.((((((((((.((((((((((...(((((......))))).......)))))))))).))))))))))...

Structure
--U          U          ----uua     ac 
   GAGGUAGUAG UUGUAUAGUU       ggauc  a
   |||||||||| ||||||||||       |||||   
   uucugucauc gacauaucaa       ucuag  c
ucu          u          uagaggg     ac 


Annotation confidence Not enough data
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Genome context
JH425329.1: 2724340-2724411 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-let-7g-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-let-7g

Accession MIMAT0042080
Description Astatotilapia burtoni abu-let-7g mature miRNA
Sequence 1 - UGAGGUAGUAGUUUGUAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381