miRBase entry: abu-mir-222-2

Stem-loop abu-mir-222-2

Accession

MI0033777

Description

Astatotilapia burtoni abu-mir-222-2 precursor miRNA

Sequence

ugcucaguaggcaguguagauccuguguagcaaucagcAGCUACAUCUGGCUACUGGGUCUC
.(((((((((.((((((((...(((.........)))...))))).))).)))))))))...

Structure

--u         g   -     auc   ugu 
   gcucaguag cag uguag   cug   a
   ||||||||| ||| |||||   |||   g
   UGGGUCAUC GUC ACAUC   gac   c
CUC         G   U     GAc   uaa

Annotation confidence Not enough data

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Genome context

JH425600.1: 561624-561685 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-222-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-222

Accession	MIMAT0042079
Description	Astatotilapia burtoni abu-miR-222 mature miRNA
Sequence	39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381