miRBase entry: abu-mir-144

Stem-loop abu-mir-144

Accession

MI0033786

Description

Astatotilapia burtoni abu-mir-144 precursor miRNA

Sequence

GGAUAUCAUCUUAUACUGUAAGUuuaaaaaagagacacuacaguauagaugauguacu
..(((((((((.((((((((.((((.......))))..)))))))))))))))))...

Structure

-GG         U        -A    aa 
   AUAUCAUCU AUACUGUA  GUuu  a
   ||||||||| ||||||||  ||||  a
   uguaguaga uaugacau  caga  a
uca         -        ca    ga

Annotation confidence Not enough data

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Genome context

JH425418.1: 516936-516993 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-144

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-144

Accession	MIMAT0042089
Description	Astatotilapia burtoni abu-miR-144 mature miRNA
Sequence	1 - GGAUAUCAUCUUAUACUGUAAGU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381