miRBase entry: abu-mir-133b

Stem-loop abu-mir-133b

Accession

MI0033789

Description

Astatotilapia burtoni abu-mir-133b precursor miRNA

Sequence

gcuggucaaacggaaccaagucagguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure

-      ca  c  a      --   g ug 
 gcuggu  aa gg accaag  uca g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu

Annotation confidence Not enough data

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Genome context

JH425328.1: 2255445-2255503 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-133b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-133b

Accession	MIMAT0042092
Description	Astatotilapia burtoni abu-miR-133b mature miRNA
Sequence	39 - UUUGGUCCCCUUCAACCAGCU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381