miRBase entry: abu-mir-125a-1

Stem-loop abu-mir-125a-1

Accession

MI0033793

Description

Astatotilapia burtoni abu-mir-125a-1 precursor miRNA

Sequence

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucacaggugagguccuugggaac
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGau    u
  |||| |||  ||||| ||||||||     
  aggg uuc  ggagu ggacacug    g
ca    -   cu     -        gaaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425409.1: 296607-296664 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-125a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-125a

Accession	MIMAT0042095
Description	Astatotilapia burtoni abu-miR-125a mature miRNA
Sequence	1 - UCCCUGAGACCCUUAACCUGUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381