miRBase entry: abu-mir-125b-1

Stem-loop abu-mir-125b-1


Accession
MI0033801
Description
Astatotilapia burtoni abu-mir-125b-1 precursor miRNA


Sequence

UCCCUGAGACCCUAACUUGUGAcguuuugcugugaugugcacggguuggguucuugggagcu
((((.((((.((((((((((((((((.......))))).))))))))))).))))))))...

Structure
---    U    C           -     uu 
   UCCC GAGA CCUAACUUGUG Acguu  g
   |||| |||| ||||||||||| |||||  c
   aggg uucu ggguugggcac uguag  u
ucg    -    u           g     ug 


Annotation confidence Not enough data
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Genome context
JH425368.1: 1263855-1263916 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-125b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-125b

Accession MIMAT0042091
Description Astatotilapia burtoni abu-miR-125b mature miRNA
Sequence 1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381