miRBase entry: abu-mir-19b-1

Stem-loop abu-mir-19b-1

Accession

MI0033802

Description

Astatotilapia burtoni abu-mir-19b-1 precursor miRNA

Sequence

uuuugcugguuugcauucagcuuuaaugguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((..((((.............)))))))))).))).))))))...

Structure

---      -   -      uu    uuuaa 
   uuuugc ugg uuugca  cagc     u
   |||||| ||| ||||||  ||||     g
   AAAACG ACC AAACGU  GUcg     g
GUC      U   U      --    uuugu

Annotation confidence Not enough data

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Genome context

JH425469.1: 936339-936396 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-19b

Accession	MIMAT0042100
Description	Astatotilapia burtoni abu-miR-19b mature miRNA
Sequence	37 - UGUGCAAAUCCAUGCAAAACUG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381