miRBase entry: abu-mir-142-1

Stem-loop abu-mir-142-1


Accession
MI0033805
Description
Astatotilapia burtoni abu-mir-142-1 precursor miRNA


Sequence

CAUAAAGUAGAAAGCACUACUaaacuccucgccacaguGUAGUGUUUCCUACUUUAUGGaug
((((((((((.(((((((((..................))))))))).))))))))))....

Structure
----          A         Uaaacucc 
    CAUAAAGUAG AAGCACUAC        u
    |||||||||| |||||||||         
    GUAUUUCAUC UUUGUGAUG        c
guaG          C         ugacaccg 


Annotation confidence Not enough data
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Genome context
JH425418.1: 138787-138848 [-]

Database links

Mature abu-miR-142-5p

Accession MIMAT0042103
Description Astatotilapia burtoni abu-miR-142-5p mature miRNA
Sequence 1 - CAUAAAGUAGAAAGCACUACU - 21
Evidence experimental
Illumina [1]

Mature abu-miR-142-3p

Accession MIMAT0042104
Description Astatotilapia burtoni abu-miR-142-3p mature miRNA
Sequence 39 - GUAGUGUUUCCUACUUUAUGG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381