miRBase entry: abu-mir-96-1

Stem-loop abu-mir-96-1


Accession
MI0033807
Description
Astatotilapia burtoni abu-mir-96-1 precursor miRNA


Sequence

UUUGGCACUAGCACAUUUUUGCUucuguauauauacuuugagcaauuauguguagugccaauau
.(((((((((.(((((..((((((..(((....)))...))))))..))))))))))))))...

Structure
--U         G     UU      -cu   u 
   UUGGCACUA CACAU  UUGCUu   gua a
   ||||||||| |||||  ||||||   |||  
   aaccgugau gugua  aacgag   cau u
uau         -     uu      uuu   a 


Annotation confidence Not enough data
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Genome context
JH425406.1: 933550-933613 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-96-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-96

Accession MIMAT0042105
Description Astatotilapia burtoni abu-miR-96 mature miRNA
Sequence 1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381