miRBase entry: abu-mir-96-2

Stem-loop abu-mir-96-2


Accession
MI0033808
Description
Astatotilapia burtoni abu-mir-96-2 precursor miRNA


Sequence

UUUGGCACUAGCACAUUUUUGCUuuguuucuccucuuuugagcaaucauguguggugccaauau
.(((((((((.(((((..((((((...............))))))..))))))))))))))...

Structure
--U         G     UU      uguuuc 
   UUGGCACUA CACAU  UUGCUu      u
   ||||||||| |||||  ||||||      c
   aaccguggu gugua  aacgag      c
uau         -     cu      uuuucu 


Annotation confidence Not enough data
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Genome context
JH425488.1: 1132791-1132854 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-96-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-96

Accession MIMAT0042105
Description Astatotilapia burtoni abu-miR-96 mature miRNA
Sequence 1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381