miRBase entry: abu-mir-27a

Stem-loop abu-mir-27a

Accession

MI0033812

Description

Astatotilapia burtoni abu-mir-27a precursor miRNA

Sequence

aggacuuagcucgcuccgugaacaguucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--a         u    cc       guu   u a 
   ggacuuagc cgcu  gugaaca   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u

Annotation confidence Not enough data

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Genome context

JH425323.1: 1539832-1539894 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-27a

Accession	MIMAT0042109
Description	Astatotilapia burtoni abu-miR-27a mature miRNA
Sequence	43 - UUCACAGUGGCUAAGUUCCGC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381