miRBase entry: abu-mir-301b-1

Stem-loop abu-mir-301b-1


Accession
MI0033814
Description
Astatotilapia burtoni abu-mir-301b-1 precursor miRNA


Sequence

uuugacaauguugcacuacuguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGC
..(((((((((((((((.(((............))).))))))))...)))))))....

Structure
--uu       ---        a   uacca 
    ugacaau   guugcacu cug     u
    |||||||   |||||||| |||      
    ACUGUUA   UAACGUGA gau     c
CGAU       UGA        C   cuuac 


Annotation confidence Not enough data
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Genome context
JH425495.1: 27462-27520 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-301b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-301b

Accession MIMAT0042111
Description Astatotilapia burtoni abu-miR-301b mature miRNA
Sequence 37 - CAGUGCAAUAGUAUUGUCAUAGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381