miRBase entry: abu-let-7c

Stem-loop abu-let-7c

Accession

MI0033818

Description

Astatotilapia burtoni abu-let-7c precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaauuacacccugggaguuaacuguacaaccuucuagcuuucc
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ua ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   uuc auc uccaacaugucaa   uug  g  c
ccu   g   u             ---   ag gu

Annotation confidence Not enough data

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Genome context

JH425516.1: 688134-688200 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-let-7c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-let-7c

Accession	MIMAT0042114
Description	Astatotilapia burtoni abu-let-7c mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381